
- Scikit Image – Introduction
- Scikit Image - Image Processing
- Scikit Image - Numpy Images
- Scikit Image - Image datatypes
- Scikit Image - Using Plugins
- Scikit Image - Image Handlings
- Scikit Image - Reading Images
- Scikit Image - Writing Images
- Scikit Image - Displaying Images
- Scikit Image - Image Collections
- Scikit Image - Image Stack
- Scikit Image - Multi Image
- Scikit Image - Data Visualization
- Scikit Image - Using Matplotlib
- Scikit Image - Using Ploty
- Scikit Image - Using Mayavi
- Scikit Image - Using Napari
- Scikit Image - Color Manipulation
- Scikit Image - Alpha Channel
- Scikit Image - Conversion b/w Color & Gray Values
- Scikit Image - Conversion b/w RGB & HSV
- Scikit Image - Conversion to CIE-LAB Color Space
- Scikit Image - Conversion from CIE-LAB Color Space
- Scikit Image - Conversion to luv Color Space
- Scikit Image - Conversion from luv Color Space
- Scikit Image - Image Inversion
- Scikit Image - Painting Images with Labels
- Scikit Image - Contrast & Exposure
- Scikit Image - Contrast
- Scikit Image - Contrast enhancement
- Scikit Image - Exposure
- Scikit Image - Histogram Matching
- Scikit Image - Histogram Equalization
- Scikit Image - Local Histogram Equalization
- Scikit Image - Tinting gray-scale images
- Scikit Image - Image Transformation
- Scikit Image - Scaling an image
- Scikit Image - Rotating an Image
- Scikit Image - Warping an Image
- Scikit Image - Affine Transform
- Scikit Image - Piecewise Affine Transform
- Scikit Image - ProjectiveTransform
- Scikit Image - EuclideanTransform
- Scikit Image - Radon Transform
- Scikit Image - Line Hough Transform
- Scikit Image - Probabilistic Hough Transform
- Scikit Image - Circular Hough Transforms
- Scikit Image - Elliptical Hough Transforms
- Scikit Image - Polynomial Transform
- Scikit Image - Image Pyramids
- Scikit Image - Pyramid Gaussian Transform
- Scikit Image - Pyramid Laplacian Transform
- Scikit Image - Swirl Transform
- Scikit Image - Morphological Operations
- Scikit Image - Erosion
- Scikit Image - Dilation
- Scikit Image - Black & White Tophat Morphologies
- Scikit Image - Convex Hull
- Scikit Image - Generating footprints
- Scikit Image - Isotopic Dilation & Erosion
- Scikit Image - Isotopic Closing & Opening of an Image
- Scikit Image - Skelitonizing an Image
- Scikit Image - Morphological Thinning
- Scikit Image - Masking an image
- Scikit Image - Area Closing & Opening of an Image
- Scikit Image - Diameter Closing & Opening of an Image
- Scikit Image - Morphological reconstruction of an Image
- Scikit Image - Finding local Maxima
- Scikit Image - Finding local Minima
- Scikit Image - Removing Small Holes from an Image
- Scikit Image - Removing Small Objects from an Image
- Scikit Image - Filters
- Scikit Image - Image Filters
- Scikit Image - Median Filter
- Scikit Image - Mean Filters
- Scikit Image - Morphological gray-level Filters
- Scikit Image - Gabor Filter
- Scikit Image - Gaussian Filter
- Scikit Image - Butterworth Filter
- Scikit Image - Frangi Filter
- Scikit Image - Hessian Filter
- Scikit Image - Meijering Neuriteness Filter
- Scikit Image - Sato Filter
- Scikit Image - Sobel Filter
- Scikit Image - Farid Filter
- Scikit Image - Scharr Filter
- Scikit Image - Unsharp Mask Filter
- Scikit Image - Roberts Cross Operator
- Scikit Image - Lapalace Operator
- Scikit Image - Window Functions With Images
- Scikit Image - Thresholding
- Scikit Image - Applying Threshold
- Scikit Image - Otsu Thresholding
- Scikit Image - Local thresholding
- Scikit Image - Hysteresis Thresholding
- Scikit Image - Li thresholding
- Scikit Image - Multi-Otsu Thresholding
- Scikit Image - Niblack and Sauvola Thresholding
- Scikit Image - Restoring Images
- Scikit Image - Rolling-ball Algorithm
- Scikit Image - Denoising an Image
- Scikit Image - Wavelet Denoising
- Scikit Image - Non-local means denoising for preserving textures
- Scikit Image - Calibrating Denoisers Using J-Invariance
- Scikit Image - Total Variation Denoising
- Scikit Image - Shift-invariant wavelet denoising
- Scikit Image - Image Deconvolution
- Scikit Image - Richardson-Lucy Deconvolution
- Scikit Image - Recover the original from a wrapped phase image
- Scikit Image - Image Inpainting
- Scikit Image - Registering Images
- Scikit Image - Image Registration
- Scikit Image - Masked Normalized Cross-Correlation
- Scikit Image - Registration using optical flow
- Scikit Image - Assemble images with simple image stitching
- Scikit Image - Registration using Polar and Log-Polar
- Scikit Image - Feature Detection
- Scikit Image - Dense DAISY Feature Description
- Scikit Image - Histogram of Oriented Gradients
- Scikit Image - Template Matching
- Scikit Image - CENSURE Feature Detector
- Scikit Image - BRIEF Binary Descriptor
- Scikit Image - SIFT Feature Detector and Descriptor Extractor
- Scikit Image - GLCM Texture Features
- Scikit Image - Shape Index
- Scikit Image - Sliding Window Histogram
- Scikit Image - Finding Contour
- Scikit Image - Texture Classification Using Local Binary Pattern
- Scikit Image - Texture Classification Using Multi-Block Local Binary Pattern
- Scikit Image - Active Contour Model
- Scikit Image - Canny Edge Detection
- Scikit Image - Marching Cubes
- Scikit Image - Foerstner Corner Detection
- Scikit Image - Harris Corner Detection
- Scikit Image - Extracting FAST Corners
- Scikit Image - Shi-Tomasi Corner Detection
- Scikit Image - Haar Like Feature Detection
- Scikit Image - Haar Feature detection of coordinates
- Scikit Image - Hessian matrix
- Scikit Image - ORB feature Detection
- Scikit Image - Additional Concepts
- Scikit Image - Render text onto an image
- Scikit Image - Face detection using a cascade classifier
- Scikit Image - Face classification using Haar-like feature descriptor
- Scikit Image - Visual image comparison
- Scikit Image - Exploring Region Properties With Pandas
Scikit Image - Total Variation Denoising
In image processing, total variation denoising, also referred to as total variation regularization or total variation filtering, is a technique used to reduce noise in an image while preserving its important features. The main objective of this filter is to minimize the total variation norm of the image while maintaining its similarity to the original. Total variation is essentially the L1 norm of the image's gradient.
The scikit-image library provides dedicated functions for applying both the TV Chambolle(denoise_tv_chambolle()) and TV Bregman(denoise_tv_bregman()) denoising algorithms to images.
Using the skimage.restoration.denoise_tv_bregman() function
The restoration.denoise_tv_bregman() function is designed to perform total variation denoising using split-Bregman optimization. This denoising technique aims to find an image u that has reduced total variation compared to the noisy input image f, while still maintaining similarity to f. It is formulated as an optimization problem known as the Rudin--Osher--Fatemi (ROF) minimization problem.
The ROF minimization problem can be expressed as follows −
$$\mathrm{_{u}^{min}\sum_{i=0}^{N-1}\left (\left|\triangledown_{u_{i}} \right| +\frac{\lambda }{2}\left ( f_{i}-u_{i} \right )^{2} \right )}$$
Here, $\lambda$ is a positive parameter, and the cost function consists of two terms: the first term represents total variation, and the second term represents data fidelity. As approaches 0, the total variation term dominates, resulting in a solution with reduced total variation but potentially less similarity to the input data.
Syntax
Following is the syntax of this function −
skimage.restoration.denoise_tv_bregman(image, weight=5.0, max_num_iter=100, eps=0.001, isotropic=True, *, channel_axis=None)
Parameters
The function accepts the following parameters −
image: Input image to be denoised, which should be converted using img_as_float().
weight (optional): Denoising weight, which is equal to $\mathrm{\frac{\lambda }{2}}$. Smaller values of weight result in more denoising, but this may lead to reduced similarity to the original image.
eps (optional): Tolerance value $\mathrm{\varepsilon > 0}$ for the stop criterion. The algorithm stops when $\mathrm{\left\|u_{n}-u_{n-1} \right\|_{2}\lt \varepsilon}$.
max_num_iter (optional): Maximum number of iterations for the optimization process.
isotropic (optional): A boolean parameter that allows you to switch between isotropic and anisotropic total variation (TV) denoising. Isotropic TV denoising is the default behavior.
channel_axis (optional): If None, it assumes that the image is grayscale (single-channel). Otherwise, this parameter specifies which axis of the array corresponds to color channels. This parameter was introduced in version 0.19 of scikit-image.
The function returns the denoised image u as an ndarray.
Example
Here's an example of how to use restoration.denoise_tv_bregman() function for performing the total variation denoising using split-Bregman optimization.
import numpy as np import matplotlib.pyplot as plt from skimage import io, util from skimage.restoration import denoise_tv_bregman # Load a sample image and convert it to floating-point format image = util.img_as_float(io.imread('Images/butterfly.jpg')) # Add noise to the image noisy = image + 0.4 * np.random.standard_normal(image.shape) # Perform total variation denoising using TV Bregman denoised_image = denoise_tv_bregman(noisy, weight=0.1, eps=0.0002, max_num_iter=200, channel_axis=-1) # Visualize the image, noisy, and denoised images fig, axes = plt.subplots(1, 3, figsize=(12, 4)) ax = axes.ravel() ax[0].imshow(image, cmap='gray') ax[0].set_title('image Image') ax[0].axis('off') ax[1].imshow(noisy, cmap='gray') ax[1].set_title('Noisy Image') ax[1].axis('off') ax[2].imshow(denoised_image, cmap='gray') ax[2].set_title('Denoised Image') ax[2].axis('off') plt.tight_layout() plt.show()
Output

Using the skimage.restoration.denoise_tv_chambolle() function
The restoration.denoise_tv_chambolle() function is perform total variation denoising in nD. This denoising technique aims to find an image u that has reduced total variation compared to the noisy input image f, while still maintaining similarity to f. It is formulated as an optimization problem known as the Rudin--Osher--Fatemi (ROF) minimization problem.
The ROF minimization problem can be expressed as follows −
$$\mathrm{_{u}^{min}\sum_{i=0}^{N-1}\left (\left|\triangledown_{u_{i}} \right| +\frac{\lambda }{2}\left ( f_{i}-u_{i} \right )^{2} \right )}$$
Here, $\mathrm{\lambda }$ is a positive parameter, and the cost function consists of two terms: the first term represents total variation, and the second term represents data fidelity. As approaches 0, the total variation term dominates, resulting in a solution with reduced total variation but potentially less similarity to the input data.
Syntax
Following is the syntax of this function −
skimage.restoration.denoise_tv_chambolle(image, weight=0.1, eps=0.0002, max_num_iter=200, *, channel_axis=None)
Parameters
The function accepts the following parameters −
Image (ndarray): Input image to be denoised, which should be converted using img_as_float().
weight (optional): Denoising weight, which is equal to $\mathrm{\frac{1}{\lambda }}$. Therefore, the greater the weight, the more aggressive the denoising, but it may come at the expense of fidelity to the original image.
eps (float, optional): Tolerance value ϵ > 0 for the stop criterion. The algorithm stops when |E_{n-1} - E_n| < \varepsilon * E_0`.
max_num_iter (optional): Maximum number of iterations for the optimization process.
channel_axis (optional): If None, it assumes that the image is grayscale (single-channel). Otherwise, this parameter specifies which axis of the array corresponds to color channels. This parameter was introduced in version 0.19 of scikit-image.
The function returns the denoised image u as an ndarray.
It's important to ensure that the channel_axis parameter is set appropriately, especially when working with color images.
The principle of total variation denoising, which this function implements, is to minimize the total variation of an image. Total variation can be thought of as the integral of the norm of the image gradient. In practice, total variation denoising tends to produce images with a cartoon-like appearance, that is, piecewise-constant images.
Example
Here is an examples of using the restoration.denoise_tv_chambolle() function on a 2D image.
import numpy as np import matplotlib.pyplot as plt from skimage import color, io, util from skimage.restoration import denoise_tv_chambolle # Load theinput image and convert it to grayscale image = color.rgb2gray(io.imread('Images/Tajmahal.jpg')) image = util.img_as_float(image) # Add noise to the image rng = np.random.default_rng() image += 0.5 * image.std() * rng.standard_normal(image.shape) # Denoise the noisy image using TV Chambolle denoising with a specified weight. denoised_image = denoise_tv_chambolle(image, weight=0.1) # Visualize the noisy, and denoised images fig, axes = plt.subplots(1, 2, figsize=(10, 5)) ax = axes.ravel() ax[0].imshow(image, cmap='gray') ax[0].set_title('Noisy Image') ax[0].axis('off') ax[1].imshow(denoised_image, cmap='gray') ax[1].set_title('Denoised Image') ax[1].axis('off') plt.tight_layout() plt.show()
Output

Example
Let's apply the restoration.denoise_tv_chambolle() function on a 3D image.
import numpy as np import matplotlib.pyplot as plt from skimage import io, util from skimage.restoration import denoise_tv_chambolle # Load the input image image = util.img_as_float(io.imread('Images/Tajmahal.jpg')) # Add noise to the image rng = np.random.default_rng() image += 0.5 * image.std() * rng.standard_normal(image.shape) # Denoise the noisy image using TV Chambolle denoising with a specified weight. denoised_image = denoise_tv_chambolle(image, weight=0.1, channel_axis=-1) # Visualize the noisy, and denoised image fig, axes = plt.subplots(1, 2, figsize=(10, 5)) ax = axes.ravel() ax[0].imshow(image, cmap='gray') ax[0].set_title('Noisy Slice') ax[0].axis('off') ax[1].imshow(denoised_image, cmap='gray') ax[1].set_title('Denoised image') ax[1].axis('off') plt.tight_layout() plt.show()
Output
